PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010110954.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 334aa    MW: 36243.4 Da    PI: 8.4062
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010110954.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00122041223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                     C++C+++F ++  L  H+r H
  XP_010110954.1 20 ACSYCKRVFDDPWALGGHQRAH 41
                    599*****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0002801941IPR007087Zinc finger, C2H2
PROSITE profilePS501578.6831946IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MNFHLTSGEK NVERCPHICA CSYCKRVFDD PWALGGHQRA HREDTRSRKS WYVPGRSGNP  60
LNMTGPTPNS HMTTQFKHFP GGSGNNQGAV FGKAPPSLIF PKRLPTNNNG WANVRQLSVN  120
SVGNTKTSFC AAPNFPSGGG RAEIHQLNTF SGTASAPTYC TNPSAIPANP SLLMGPGNVC  180
QFNTNQSRSF MGGGQFSGNA LPQFQYLNQG IYAVAVPGPL LSSNQQPSFR GPTNIGSSFP  240
YENHLSGRGG FGEYNENHFL THQGGKKRCF GEATHVMSVP KMPKIDSNLA METVEHGKKE  300
LLLFKDAEKS SSDLEISVDA NEEPETDLDL SLHL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010110954.10.0hypothetical protein L484_021648
TrEMBLW9SH630.0W9SH63_9R
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1710333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.13e-06C2H2 family protein